IL_7UCK_116

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)U*ACGCG

Length

18 nucleotides

Bulged bases

7UCK|1|5|C|3791, 7UCK|1|5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UCK|1|5|C|3781
7UCK|1|5|5MC|3782
7UCK|1|5|A|3783
7UCK|1|5|A|3784
7UCK|1|5|A2M|3785
7UCK|1|5|U|3786
7UCK|1|5|G|3787
7UCK|1|5|C|3788
7UCK|1|5|C|3789
7UCK|1|5|U|3790
7UCK|1|5|C|3791
7UCK|1|5|OMG|3792
7UCK|1|5|U|3793
*
7UCK|1|5|A|3807
7UCK|1|5|C|3808
7UCK|1|5|G|3809
7UCK|1|5|C|3810
7UCK|1|5|G|3811

Current chains

Chain 5

28s rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41