IL_7UCK_134

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCA(1MA)G*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCK_134 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1237

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7UCK|1|5|C|4412
7UCK|1|5|C|4413
7UCK|1|5|A|4414
7UCK|1|5|1MA|4415
7UCK|1|5|G|4416
*
7UCK|1|5|C|4426
7UCK|1|5|G|4427
7UCK|1|5|A|4428
7UCK|1|5|C|4429
7UCK|1|5|G|4430

Current chains

Chain 5

28s rRNA

Nearby chains

Chain I

Ribosomal protein L10

Chain m

60S ribosomal protein L40