IL_7UCK_138

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCK_138 not in the Motif Atlas

Homologous match to IL_8C3A_118

Geometric discrepancy: 0.1179

The information below is about IL_8C3A_118

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7UCK|1|5|C|4466
7UCK|1|5|A|4467
7UCK|1|5|U|4468
*
7UCK|1|5|G|4489
7UCK|1|5|C|4490
7UCK|1|5|G|4491

Current chains

Chain 5

28s rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L23