3D structure

PDB id
7UCK (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UGGAUAAC*GCUAAUA(OMC)A
Length
17 nucleotides
Bulged bases
7UCK|1|9|U|172
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7UCK|1|9|U|144
7UCK|1|9|G|145
7UCK|1|9|G|146
7UCK|1|9|A|147
7UCK|1|9|U|148
7UCK|1|9|A|149
7UCK|1|9|A|150
7UCK|1|9|C|151
*
7UCK|1|9|G|167
7UCK|1|9|C|168
7UCK|1|9|U|169
7UCK|1|9|A|170
7UCK|1|9|A|171
7UCK|1|9|U|172
7UCK|1|9|A|173
7UCK|1|9|OMC|174
7UCK|1|9|A|175

Current chains

Chain 9
18S rRNA

Nearby chains

Chain GG
40S ribosomal protein S6
Chain W
Ribosomal protein L24
Chain YY
40S ribosomal protein S24

Coloring options:

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