IL_7UCK_189

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCK_189 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.1943

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7UCK|1|9|C|188
7UCK|1|9|U|189
7UCK|1|9|G|190
7UCK|1|9|A|191
7UCK|1|9|C|192
*
7UCK|1|9|G|207
7UCK|1|9|G|208
7UCK|1|9|A|209
7UCK|1|9|U|210
7UCK|1|9|G|211

Current chains

Chain 9

18S rRNA

Nearby chains

Chain II

40S ribosomal protein S8