IL_7UCK_216

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCK_216 not in the Motif Atlas

Geometric match to IL_5TBW_115

Geometric discrepancy: 0.1109

The information below is about IL_5TBW_115

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7UCK|1|9|U|805
7UCK|1|9|U|806
7UCK|1|9|G|807
*
7UCK|1|9|C|856
7UCK|1|9|U|857
7UCK|1|9|A|858

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain HH

40S ribosomal protein S7

Chain LL

40S ribosomal protein S11

Chain WW

40S ribosomal protein S15a