IL_7UCK_256

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(OMC)CC*G(UR3)A(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, UR3, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCK_256 not in the Motif Atlas

Homologous match to IL_8P9A_453

Geometric discrepancy: 0.1105

The information below is about IL_8P9A_453

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7UCK|1|9|G|1702
7UCK|1|9|OMC|1703
7UCK|1|9|C|1704
7UCK|1|9|C|1705
*
7UCK|1|9|G|1829
7UCK|1|9|UR3|1830
7UCK|1|9|A|1831
7UCK|1|9|6MZ|1832
7UCK|1|9|C|1833

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 1

mRNA

Chain 2

Transfer RNA; tRNA

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain n

eL41