IL_7UCK_269

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(4AC)G*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCK_269 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1169

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7UCK|1|9|C|1841
7UCK|1|9|4AC|1842
7UCK|1|9|G|1843
*
7UCK|1|9|C|1856
7UCK|1|9|G|1857
7UCK|1|9|G|1858

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Aa

eS26

Chain OO

40S ribosomal protein S14

Chain n

eL41