IL_7UCK_297

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCK_297 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.2579

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7UCK|1|9|C|927
7UCK|1|9|G|928
7UCK|1|9|G|929
7UCK|1|9|C|930
7UCK|1|9|C|931
*
7UCK|1|9|G|1010
7UCK|1|9|A|1011
7UCK|1|9|A|1012
7UCK|1|9|U|1013
7UCK|1|9|G|1014

Current chains

Chain 9

18S rRNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain Bb

40S ribosomal protein S27

Chain NN

40S ribosomal protein S13