IL_7UG7_021

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7UG7|1|16|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_021 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.1117

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7UG7|1|16|G|446
7UG7|1|16|G|447
7UG7|1|16|A|448
7UG7|1|16|G|449
7UG7|1|16|G|450
*
7UG7|1|16|C|483
7UG7|1|16|G|484
7UG7|1|16|U|485
7UG7|1|16|U|486
7UG7|1|16|A|487
7UG7|1|16|C|488

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SD

30S ribosomal protein S4

Chain SP

30S ribosomal protein S16