3D structure

PDB id
7UG7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B
Experimental method
ELECTRON MICROSCOPY
Resolution
2.58 Å

Loop

Sequence
UAA*UG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UG7_027 not in the Motif Atlas
Homologous match to IL_5J7L_028
Geometric discrepancy: 0.0854
The information below is about IL_5J7L_028
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_48076.6
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
41

Unit IDs

7UG7|1|16|U|594
7UG7|1|16|A|595
7UG7|1|16|A|596
*
7UG7|1|16|U|644
7UG7|1|16|G|645

Current chains

Chain 16
16S rRNA

Nearby chains

Chain SH
30S ribosomal protein S8
Chain SQ
30S ribosomal protein S17

Coloring options:


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