IL_7UG7_036

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_036 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0844

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7UG7|1|16|C|779
7UG7|1|16|A|780
7UG7|1|16|A|781
7UG7|1|16|A|782
7UG7|1|16|C|783
*
7UG7|1|16|G|799
7UG7|1|16|G|800
7UG7|1|16|U|801
7UG7|1|16|A|802
7UG7|1|16|G|803

Current chains

Chain 16

16S rRNA

Nearby chains

Chain 23

Large subunit ribosomal RNA; LSU rRNA

Chain SK

30S ribosomal protein S11

Chain SU

30S ribosomal protein S21