IL_7UG7_054

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_054 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.1144

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7UG7|1|16|C|1259
7UG7|1|16|G|1260
7UG7|1|16|A|1261
7UG7|1|16|C|1262
7UG7|1|16|C|1263
*
7UG7|1|16|G|1272
7UG7|1|16|C|1273
7UG7|1|16|A|1274
7UG7|1|16|A|1275
7UG7|1|16|G|1276

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SN

30S ribosomal protein S14

Chain SS

30S ribosomal protein S19