IL_7UG7_064

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_064 not in the Motif Atlas

Geometric match to IL_5J7L_245

Geometric discrepancy: 0.0721

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7UG7|1|23|G|24
7UG7|1|23|U|25
7UG7|1|23|G|26
7UG7|1|23|G|27
7UG7|1|23|A|28
7UG7|1|23|U|29
7UG7|1|23|G|30
*
7UG7|1|23|C|510
7UG7|1|23|U|511
7UG7|1|23|G|512
7UG7|1|23|A|513
7UG7|1|23|A|514
7UG7|1|23|A|515
7UG7|1|23|C|516

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LT

50S ribosomal protein L20

Chain LV

50S ribosomal protein L22

Chain Lf

50S ribosomal protein L32