IL_7UG7_069

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_069 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.0486

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7UG7|1|23|G|188
7UG7|1|23|G|189
7UG7|1|23|A|190
7UG7|1|23|A|191
7UG7|1|23|C|192
7UG7|1|23|U|193
7UG7|1|23|G|194
*
7UG7|1|23|C|201
7UG7|1|23|U|202
7UG7|1|23|A|203
7UG7|1|23|A|204
7UG7|1|23|G|205
7UG7|1|23|U|206
7UG7|1|23|A|207
7UG7|1|23|C|208

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LO

50S ribosomal protein L15

Chain Lb

50S ribosomal protein L28

Chain Li

50S ribosomal protein L35