IL_7UG7_128

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

7UG7|1|23|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_128 not in the Motif Atlas

Geometric match to IL_5J7L_309

Geometric discrepancy: 0.1028

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7UG7|1|23|U|1712
7UG7|1|23|A|1713
7UG7|1|23|U|1714
7UG7|1|23|G|1715
7UG7|1|23|U|1716
7UG7|1|23|A|1717
7UG7|1|23|G|1718
*
7UG7|1|23|U|1742
7UG7|1|23|G|1743
7UG7|1|23|A|1744
7UG7|1|23|A|1745
7UG7|1|23|A|1746

Current chains

Chain 23

23S rRNA

Nearby chains