IL_7UG7_135

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_135 not in the Motif Atlas

Geometric match to IL_1I6U_002

Geometric discrepancy: 0.1878

The information below is about IL_1I6U_002

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

7UG7|1|23|G|1846
7UG7|1|23|A|1847
7UG7|1|23|A|1848
7UG7|1|23|G|1849
*
7UG7|1|23|C|1893
7UG7|1|23|C|1894

Current chains

Chain 23

23S rRNA

Nearby chains

Chain 16

Small subunit ribosomal RNA; SSU rRNA

Chain Dt

Transfer RNA; tRNA

Chain LB

50S ribosomal protein L2