IL_7UG7_158

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_158 not in the Motif Atlas

Geometric match to IL_5J7L_338

Geometric discrepancy: 0.0596

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7UG7|1|23|C|2466
7UG7|1|23|C|2467
7UG7|1|23|A|2468
7UG7|1|23|A|2469
7UG7|1|23|G|2470
*
7UG7|1|23|C|2480
7UG7|1|23|G|2481
7UG7|1|23|A|2482
7UG7|1|23|C|2483
7UG7|1|23|G|2484

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LP

50S ribosomal protein L16

Chain Lj

50S ribosomal protein L36