IL_7UNR_066

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7UNR|1|A|G|1689

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNR_066 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0721

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7UNR|1|A|C|1676
7UNR|1|A|G|1677
7UNR|1|A|U|1678
7UNR|1|A|A|1679
7UNR|1|A|A|1680
7UNR|1|A|C|1681
*
7UNR|1|A|G|1686
7UNR|1|A|G|1687
7UNR|1|A|A|1688
7UNR|1|A|G|1689
7UNR|1|A|A|1690
7UNR|1|A|A|1691
7UNR|1|A|G|1692

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA