IL_7UNR_090

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNR_090 not in the Motif Atlas

Geometric match to IL_5J7L_333

Geometric discrepancy: 0.0829

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7UNR|1|A|C|2337
7UNR|1|A|G|2338
7UNR|1|A|A|2339
7UNR|1|A|G|2340
*
7UNR|1|A|C|2351
7UNR|1|A|G|2352
7UNR|1|A|A|2353
7UNR|1|A|G|2354

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain Y

50S ribosomal protein L27