3D structure

PDB id
7UNR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
AG*CAU
Length
5 nucleotides
Bulged bases
7UNR|1|B|A|66
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UNR_112 not in the Motif Atlas
Homologous match to IL_4WF9_112
Geometric discrepancy: 0.1772
The information below is about IL_4WF9_112
Detailed Annotation
Major groove intercalation
Broad Annotation
Major groove intercalation
Motif group
IL_31462.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
130

Unit IDs

7UNR|1|B|A|17
7UNR|1|B|G|18
*
7UNR|1|B|C|65
7UNR|1|B|A|66
7UNR|1|B|U|67

Current chains

Chain B
5S Ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain X
50S ribosomal protein L25

Coloring options:


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