3D structure

PDB id
7UNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GAAC*GAGUGAAAUAGAAC
Length
18 nucleotides
Bulged bases
7UNW|1|A|U|495, 7UNW|1|A|A|499
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UNW_012 not in the Motif Atlas
Geometric match to IL_5J7L_255
Geometric discrepancy: 0.0751
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

7UNW|1|A|G|472
7UNW|1|A|A|473
7UNW|1|A|A|474
7UNW|1|A|C|475
*
7UNW|1|A|G|487
7UNW|1|A|A|488
7UNW|1|A|G|489
7UNW|1|A|U|490
7UNW|1|A|G|491
7UNW|1|A|A|492
7UNW|1|A|A|493
7UNW|1|A|A|494
7UNW|1|A|U|495
7UNW|1|A|A|496
7UNW|1|A|G|497
7UNW|1|A|A|498
7UNW|1|A|A|499
7UNW|1|A|C|500

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain U
50S ribosomal protein L22
Chain W
50S ribosomal protein L24

Coloring options:


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