IL_7UNW_014

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AC*GUU

Length

5 nucleotides

Bulged bases

7UNW|1|A|U|539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNW_014 not in the Motif Atlas

Geometric match to IL_6MWN_006

Geometric discrepancy: 0.3375

The information below is about IL_6MWN_006

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7UNW|1|A|A|534
7UNW|1|A|C|535
*
7UNW|1|A|G|538
7UNW|1|A|U|539
7UNW|1|A|U|540

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L13

Chain T

50S ribosomal protein L21