3D structure

PDB id
7UNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
UAG*CG
Length
5 nucleotides
Bulged bases
7UNW|1|a|A|1435
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UNW_179 not in the Motif Atlas
Homologous match to IL_5J7L_064
Geometric discrepancy: 0.5349
The information below is about IL_5J7L_064
Detailed Annotation
Single bulged A
Broad Annotation
Single bulged A
Motif group
IL_31462.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
130

Unit IDs

7UNW|1|a|U|1434
7UNW|1|a|A|1435
7UNW|1|a|G|1436
*
7UNW|1|a|C|1454
7UNW|1|a|G|1455

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain R
50S ribosomal protein L19
Chain t
30S ribosomal protein S20

Coloring options:


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