IL_7UOO_049
3D structure
- PDB id
- 7UOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.34 Å
Loop
- Sequence
- GAGUG*CUC
- Length
- 8 nucleotides
- Bulged bases
- 7UOO|1|1|A|1263
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UOO_049 not in the Motif Atlas
- Homologous match to IL_8C3A_059
- Geometric discrepancy: 0.2022
- The information below is about IL_8C3A_059
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_63959.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7UOO|1|1|G|1262
7UOO|1|1|A|1263
7UOO|1|1|G|1264
7UOO|1|1|U|1265
7UOO|1|1|G|1266
*
7UOO|1|1|C|1275
7UOO|1|1|U|1276
7UOO|1|1|C|1277
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 8
- 60S ribosomal protein L12-A
- Chain W
- Ribosome assembly factor MRT4
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
Coloring options: