IL_7UQB_010

3D structure

PDB id

7UQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

7UQB|1|1|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQB_010 not in the Motif Atlas

Geometric match to IL_4KQY_004

Geometric discrepancy: 0.3889

The information below is about IL_4KQY_004

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

7UQB|1|1|U|177
7UQB|1|1|U|178
*
7UQB|1|1|A|238
7UQB|1|1|G|239
7UQB|1|1|U|240
7UQB|1|1|G|241

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain h

60S ribosomal protein L35-A

Chain j

60S ribosomal protein L37-A