IL_7UQB_017
3D structure
- PDB id
- 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- CAGACAGG*CAUAAUG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UQB_017 not in the Motif Atlas
- Homologous match to IL_5TBW_017
- Geometric discrepancy: 0.4229
- The information below is about IL_5TBW_017
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_33557.1
- Basepair signature
- cWW-tHH-R-L-R-L-L-R-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
7UQB|1|1|C|435
7UQB|1|1|A|436
7UQB|1|1|G|437
7UQB|1|1|A|438
7UQB|1|1|C|439
7UQB|1|1|A|440
7UQB|1|1|G|494
7UQB|1|1|G|495
*
7UQB|1|1|C|618
7UQB|1|1|A|619
7UQB|1|1|U|620
7UQB|1|1|A|621
7UQB|1|1|A|622
7UQB|1|1|U|623
7UQB|1|1|G|624
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 9
- Ribosome biogenesis protein ALB1
- Chain E
- 60S ribosomal protein L6-A
- Chain P
- 60S ribosomal protein L17-A
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
Coloring options: