IL_7UQB_039

3D structure

PDB id

7UQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQB_039 not in the Motif Atlas

Homologous match to IL_8C3A_049

Geometric discrepancy: 0.1973

The information below is about IL_8C3A_049

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7UQB|1|1|A|1120
7UQB|1|1|U|1121
7UQB|1|1|U|1122
*
7UQB|1|1|A|1136
7UQB|1|1|C|1137
7UQB|1|1|U|1138

Current chains

Chain 1

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L7-A

Chain T

60S ribosomal protein L21-A

Chain s

Nuclear GTP-binding protein NUG1