IL_7UQB_047
3D structure
- PDB id
- 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- GUGGC*GAAUC
- Length
- 10 nucleotides
- Bulged bases
- 7UQB|1|1|G|1236
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UQB_047 not in the Motif Atlas
- Homologous match to IL_8C3A_058
- Geometric discrepancy: 0.518
- The information below is about IL_8C3A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30542.5
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7UQB|1|1|G|1234
7UQB|1|1|U|1235
7UQB|1|1|G|1236
7UQB|1|1|G|1237
7UQB|1|1|C|1238
*
7UQB|1|1|G|1250
7UQB|1|1|A|1251
7UQB|1|1|A|1252
7UQB|1|1|U|1253
7UQB|1|1|C|1254
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 8
- 60S ribosomal protein L12-A
- Chain W
- Ribosome assembly factor MRT4
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
- Chain x
- RSA4 isoform 1
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