IL_7UQB_100
3D structure
- PDB id
- 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- UA*UAAG
- Length
- 6 nucleotides
- Bulged bases
- 7UQB|1|1|A|2911
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UQB_100 not in the Motif Atlas
- Geometric match to IL_4V9F_089
- Geometric discrepancy: 0.1315
- The information below is about IL_4V9F_089
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform
- Motif group
- IL_94991.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 17
Unit IDs
7UQB|1|1|U|2891
7UQB|1|1|A|2892
*
7UQB|1|1|U|2909
7UQB|1|1|A|2910
7UQB|1|1|A|2911
7UQB|1|1|G|2912
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9-A
- Chain r
- Ribosome biogenesis protein NSA2
- Chain s
- Nuclear GTP-binding protein NUG1
- Chain z
- UPF0642 protein YBL028C
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