IL_7UQZ_025
3D structure
- PDB id
- 7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- CUGAUG*CGGAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UQZ_025 not in the Motif Atlas
- Geometric match to IL_5TBW_026
- Geometric discrepancy: 0.219
- The information below is about IL_5TBW_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82488.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7UQZ|1|1|C|758
7UQZ|1|1|U|759
7UQZ|1|1|G|760
7UQZ|1|1|A|761
7UQZ|1|1|U|762
7UQZ|1|1|G|763
*
7UQZ|1|1|C|768
7UQZ|1|1|G|769
7UQZ|1|1|G|770
7UQZ|1|1|A|771
7UQZ|1|1|U|772
7UQZ|1|1|G|773
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain a
- 60S ribosomal protein L28
Coloring options: