IL_7UQZ_079

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

7UQZ|1|1|A|2242, 7UQZ|1|1|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQZ_079 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.327

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7UQZ|1|1|U|2200
7UQZ|1|1|G|2201
7UQZ|1|1|C|2202
*
7UQZ|1|1|G|2240
7UQZ|1|1|U|2241
7UQZ|1|1|A|2242
7UQZ|1|1|A|2243
7UQZ|1|1|A|2244

Current chains

Chain 1

25S rRNA

Nearby chains

Chain m

Nucleolar GTP-binding protein 2