3D structure

PDB id
7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
GAU*ACC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UQZ_102 not in the Motif Atlas
Homologous match to IL_5TBW_112
Geometric discrepancy: 0.1979
The information below is about IL_5TBW_112
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

7UQZ|1|1|G|2918
7UQZ|1|1|A|2919
7UQZ|1|1|U|2920
*
7UQZ|1|1|A|2926
7UQZ|1|1|C|2927
7UQZ|1|1|C|2928

Current chains

Chain 1
25S rRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain V
60S ribosomal protein L23-A
Chain b
Nucleolar GTP-binding protein 1
Chain m
Nucleolar GTP-binding protein 2

Coloring options:


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