IL_7UQZ_115

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

7UQZ|1|1|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQZ_115 not in the Motif Atlas

Geometric match to IL_5TBW_125

Geometric discrepancy: 0.175

The information below is about IL_5TBW_125

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7UQZ|1|1|C|3193
7UQZ|1|1|C|3194
*
7UQZ|1|1|G|3197
7UQZ|1|1|U|3198
7UQZ|1|1|G|3199

Current chains

Chain 1

25S rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain M

60S ribosomal protein L14-A

Chain O

60S ribosomal protein L16-A