IL_7UQZ_124

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

7UQZ|1|1|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQZ_124 not in the Motif Atlas

Geometric match to IL_1ET4_002

Geometric discrepancy: 0.3065

The information below is about IL_1ET4_002

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7UQZ|1|1|G|3340
7UQZ|1|1|U|3341
7UQZ|1|1|A|3342
*
7UQZ|1|1|U|3363
7UQZ|1|1|C|3364

Current chains

Chain 1

25S rRNA

Nearby chains

Chain u

Ribosome biogenesis protein RLP24