IL_7UQZ_139

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CC(OMG)*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UQZ_139 not in the Motif Atlas

Homologous match to IL_8C3A_029

Geometric discrepancy: 0.1027

The information below is about IL_8C3A_029

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7UQZ|1|1|C|803
7UQZ|1|1|C|804
7UQZ|1|1|OMG|805
*
7UQZ|1|1|C|938
7UQZ|1|1|U|939
7UQZ|1|1|G|940

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain m

Nucleolar GTP-binding protein 2