3D structure

PDB id
7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
CGG*(OMC)UG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UQZ_151 not in the Motif Atlas
Geometric match to IL_7VFT_002
Geometric discrepancy: 0.163
The information below is about IL_7VFT_002
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_42997.3
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
20

Unit IDs

7UQZ|1|1|C|2876
7UQZ|1|1|G|2877
7UQZ|1|1|G|2878
*
7UQZ|1|1|OMC|2948
7UQZ|1|1|U|2949
7UQZ|1|1|G|2950

Current chains

Chain 1
25S rRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain V
60S ribosomal protein L23-A
Chain b
Nucleolar GTP-binding protein 1

Coloring options:


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