IL_7UVV_006

3D structure

PDB id

7UVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAAGUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVV_006 not in the Motif Atlas

Geometric match to IL_4V9F_006

Geometric discrepancy: 0.1054

The information below is about IL_4V9F_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

7UVV|1|A|G|195
7UVV|1|A|G|196
7UVV|1|A|A|197
7UVV|1|A|A|198
7UVV|1|A|G|199
7UVV|1|A|U|200
7UVV|1|A|G|201
*
7UVV|1|A|C|208
7UVV|1|A|U|209
7UVV|1|A|C|210
7UVV|1|A|A|211
7UVV|1|A|G|212
7UVV|1|A|U|213
7UVV|1|A|A|214
7UVV|1|A|C|215

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain K

50S ribosomal protein L15

Chain W

50S ribosomal protein L28