IL_7UVV_085

3D structure

PDB id

7UVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

C(PSU)GA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVV_085 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.3141

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

7UVV|1|A|C|2452
7UVV|1|A|PSU|2453
7UVV|1|A|G|2454
7UVV|1|A|A|2455
*
7UVV|1|A|U|2489
7UVV|1|A|G|2490
7UVV|1|A|G|2491

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L16

Chain V

50S ribosomal protein L27