IL_7UVW_006

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

GGAAGUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVW_006 not in the Motif Atlas

Geometric match to IL_4V9F_006

Geometric discrepancy: 0.1091

The information below is about IL_4V9F_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

7UVW|1|A|G|195
7UVW|1|A|G|196
7UVW|1|A|A|197
7UVW|1|A|A|198
7UVW|1|A|G|199
7UVW|1|A|U|200
7UVW|1|A|G|201
*
7UVW|1|A|C|208
7UVW|1|A|U|209
7UVW|1|A|C|210
7UVW|1|A|A|211
7UVW|1|A|G|212
7UVW|1|A|U|213
7UVW|1|A|A|214
7UVW|1|A|C|215

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L15

Chain W

50S ribosomal protein L28