IL_7UVW_066

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7UVW|1|A|A|1797, 7UVW|1|A|C|1812, 7UVW|1|A|U|1816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVW_066 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0797

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7UVW|1|A|U|1794
7UVW|1|A|G|1795
7UVW|1|A|C|1796
7UVW|1|A|A|1797
7UVW|1|A|A|1798
7UVW|1|A|A|1799
7UVW|1|A|C|1800
*
7UVW|1|A|G|1809
7UVW|1|A|G|1810
7UVW|1|A|A|1811
7UVW|1|A|C|1812
7UVW|1|A|G|1813
7UVW|1|A|U|1814
7UVW|1|A|A|1815
7UVW|1|A|U|1816
7UVW|1|A|A|1817

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA