IL_7UVW_129

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

7UVW|1|a|A|408

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVW_129 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.145

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7UVW|1|a|U|405
7UVW|1|a|G|406
7UVW|1|a|A|407
7UVW|1|a|A|408
7UVW|1|a|G|409
7UVW|1|a|A|410
7UVW|1|a|A|411
7UVW|1|a|G|412
*
7UVW|1|a|U|423
7UVW|1|a|G|424
7UVW|1|a|U|425
7UVW|1|a|A|426
7UVW|1|a|A|427
7UVW|1|a|A|428
7UVW|1|a|G|429

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4