IL_7UVY_044

3D structure

PDB id

7UVY (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

GUGAGUAA*UGAAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVY_044 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0772

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7UVY|1|A|G|1257
7UVY|1|A|U|1258
7UVY|1|A|G|1259
7UVY|1|A|A|1260
7UVY|1|A|G|1261
7UVY|1|A|U|1262
7UVY|1|A|A|1263
7UVY|1|A|A|1264
*
7UVY|1|A|U|2007
7UVY|1|A|G|2008
7UVY|1|A|A|2009
7UVY|1|A|A|2010
7UVY|1|A|A|2011
7UVY|1|A|U|2012
7UVY|1|A|C|2013

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain R

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32