IL_7UVY_054

3D structure

PDB id

7UVY (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

AUGUAG*UGAGAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVY_054 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.3809

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tWH-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

7UVY|1|A|A|1468
7UVY|1|A|U|1469
7UVY|1|A|G|1470
7UVY|1|A|U|1471
7UVY|1|A|A|1472
7UVY|1|A|G|1473
*
7UVY|1|A|U|1509
7UVY|1|A|G|1510
7UVY|1|A|A|1511
7UVY|1|A|G|1512
7UVY|1|A|A|1513
7UVY|1|A|U|1514

Current chains

Chain A

23s ribosomal RNA

Nearby chains