IL_7UVY_127

3D structure

PDB id

7UVY (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

7UVY|1|a|A|408

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVY_127 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1505

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7UVY|1|a|U|405
7UVY|1|a|G|406
7UVY|1|a|A|407
7UVY|1|a|A|408
7UVY|1|a|G|409
7UVY|1|a|A|410
7UVY|1|a|A|411
7UVY|1|a|G|412
*
7UVY|1|a|U|423
7UVY|1|a|G|424
7UVY|1|a|U|425
7UVY|1|a|A|426
7UVY|1|a|A|427
7UVY|1|a|A|428
7UVY|1|a|G|429

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4