IL_7UVZ_065

3D structure

PDB id

7UVZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7UVZ|1|A|A|1797, 7UVZ|1|A|C|1812, 7UVZ|1|A|U|1816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVZ_065 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0692

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7UVZ|1|A|U|1794
7UVZ|1|A|G|1795
7UVZ|1|A|C|1796
7UVZ|1|A|A|1797
7UVZ|1|A|A|1798
7UVZ|1|A|A|1799
7UVZ|1|A|C|1800
*
7UVZ|1|A|G|1809
7UVZ|1|A|G|1810
7UVZ|1|A|A|1811
7UVZ|1|A|C|1812
7UVZ|1|A|G|1813
7UVZ|1|A|U|1814
7UVZ|1|A|A|1815
7UVZ|1|A|U|1816
7UVZ|1|A|A|1817

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA