IL_7UVZ_086

3D structure

PDB id

7UVZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

7UVZ|1|A|U|2487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UVZ_086 not in the Motif Atlas

Homologous match to IL_5J7L_337

Geometric discrepancy: 0.0977

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

7UVZ|1|A|A|2455
7UVZ|1|A|U|2456
7UVZ|1|A|A|2457
*
7UVZ|1|A|U|2485
7UVZ|1|A|G|2486
7UVZ|1|A|U|2487
7UVZ|1|A|U|2488
7UVZ|1|A|U|2489

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L16