IL_7UW1_006

3D structure

PDB id

7UW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii 70S ribosome-Streptothricin-D complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GGAAGUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UW1_006 not in the Motif Atlas

Geometric match to IL_4V9F_006

Geometric discrepancy: 0.0998

The information below is about IL_4V9F_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7UW1|1|A|G|195
7UW1|1|A|G|196
7UW1|1|A|A|197
7UW1|1|A|A|198
7UW1|1|A|G|199
7UW1|1|A|U|200
7UW1|1|A|G|201
*
7UW1|1|A|C|208
7UW1|1|A|U|209
7UW1|1|A|C|210
7UW1|1|A|A|211
7UW1|1|A|G|212
7UW1|1|A|U|213
7UW1|1|A|A|214
7UW1|1|A|C|215

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L15

Chain W

50S ribosomal protein L28