IL_7V08_029

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

7V08|1|1|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7V08_029 not in the Motif Atlas

Homologous match to IL_8C3A_032

Geometric discrepancy: 0.0945

The information below is about IL_8C3A_032

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7V08|1|1|G|833
7V08|1|1|U|834
*
7V08|1|1|G|859
7V08|1|1|G|860
7V08|1|1|C|861

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain R

60S ribosomal protein L19-A

Chain p

60S ribosomal protein L43-A