IL_7V08_049
3D structure
- PDB id
- 7V08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.36 Å
Loop
- Sequence
- GAGUG*CUC
- Length
- 8 nucleotides
- Bulged bases
- 7V08|1|1|A|1263
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7V08_049 not in the Motif Atlas
- Geometric match to IL_5D8H_003
- Geometric discrepancy: 0.1324
- The information below is about IL_5D8H_003
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_36931.2
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
7V08|1|1|G|1262
7V08|1|1|A|1263
7V08|1|1|G|1264
7V08|1|1|U|1265
7V08|1|1|G|1266
*
7V08|1|1|C|1275
7V08|1|1|U|1276
7V08|1|1|C|1277
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 8
- 60S ribosomal protein L12-A
- Chain W
- Ribosome assembly factor MRT4
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
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